Reads Demultiplexing with Cutadapt

Introduction

GBS sequencing of Zea mays NAM population.

Dataset description

Illumina multiplex reads from Zea mays. Each sequencing read contains a barcode sequence at 5' that allow to effectively demultiplex them.

  • Genomic DNA seq

  • Genome Analyzer IIx System (Illumina, Inc.)

Publication

https://www.pnas.org/doi/full/10.1073/pnas.1413864112

Original Data

Bioinformatic Analysis

1- Analysis Step​

Application

Demultiplexing with Cutadapt

Input

Parameters

  • Adapter Position: Beginning (5' end)

  • Allowed Errors: 0

  • Save Unmatched Sequences: False

  • Include Sample Name: False

  • File Format: .fastq.gz

  • Save Counts Table: True

Execution Time

15-20 min

Output