Long Reads Quality Assessment
Introduction
Nanopore long read sequencing of Hafnia paralvei AVS0177
Dataset description
Oxford Nanopore sequencing reads from Hafnia paralvei strain:AVS0177
Genomic DNA seq
MinION device on a FLO-MIN106 flow cell (Oxford Nanopore Technologies)
Publication
Complete Genome Sequence of Hafnia paralvei Isolate AVS0177, Harboring mcr-9 on a Plasmid
Original Data
NCBI BioProject: PRJNA761908
SRA Experiment: SRR15833986
ENA: SRR15833986
References (NCBI or Ensembl): Hafnia paralvei
Bioinformatic Analysis
1- Analysis Step
Application
Long Reads Quality Assessment (LongQC)
Input
Parameters
Sequencing Technology: Nanopore (Ligation Sequencing Kit)
Transcript mode: false
Short mode: false
Save trimmed reads: true
Execution Time
5-10 min