Long Reads Quality Assessment

Introduction

Nanopore long read sequencing of Hafnia paralvei AVS0177

Dataset description

Oxford Nanopore sequencing reads from Hafnia paralvei strain:AVS0177

  • Genomic DNA seq

  • MinION device on a FLO-MIN106 flow cell (Oxford Nanopore Technologies)

Publication

Complete Genome Sequence of Hafnia paralvei Isolate AVS0177, Harboring mcr-9 on a Plasmid

Original Data

Bioinformatic Analysis

1- Analysis Step​

Application

Long Reads Quality Assessment (LongQC)

Input

Parameters

  • Sequencing Technology: Nanopore (Ligation Sequencing Kit)

  • Transcript mode: false

  • Short mode: false

  • Save trimmed reads: true

Execution Time

5-10 min

Output