View Menu

  • Application Messages
    Shows general application message as well as summary information of specific job executions. 
  • Welcome Message
    A window which provides information about application updates and new features.
  • Progress
    This tab provides process information of any job execution in OmicsBox. Each job can be cancelled as well as a more detailed message tab can be opened.
  • File Manager
  • Cloud Usage
  • Memory/CPU Monitor
    Shows the used and available memory for OmicsBox. In blue the CPU utilization of the last minute can be seen. 

Cloud Usage


The user can open the Cloud Usage in order to monitor the number of consumed/ recharged Cloud Units or processed sequences and success jobs.

The Excel icon on the top right in Figure 1 allows exporting the table in csv format.


Figure 1: Cloud Usage


The following features that run on the BioBam Bioinformatics Cloud Platform are:

Functional Analysis:

  • CloudIPS 

  • CloudBlast

  • GO Mapping (free)

  • EggNOG Annotation (free)

Transcriptomics:

  • Trinity (free)

  • BUSCO (free)
  • TransDecoder (free)
  • STAR (free)

  • RSEM (free)

  • EdgeR (free)

  • maSigPro (free)

  • NOISeq (free)

Genome Analysis:

  • RepeatMasker (free)

  • ABySS (free)

  • SPAdes (free)
  • Augustus (free)

  • Glimmer (free)


Metagenomics:

  • Kraken (free)

  • MEGAHIT (free)

  • meta-SPAdes (free)

  • FragGeneScan (free)

  • Prodigal (free)

  • PfamScan (free)

  • EggNOG Mapper (free)

Apps:

  • CPAT (free)

  • PSORTb (free)

  • MLST (free)